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Publicacions

Seek COVER: using a disease proxy to rapidly develop and validate a personalized risk calculator for COVID-19 outcomes in an international network

R. WILLIAMS, A. MARKUS, C. YANG, T. DUARTE-SALLES, S. DUVALL, T. FALCONER, J. JONNAGADDALA, C. KIM, Y. RHO, A. WILLIAMS, A. MACHADO, M. AN, M. ARAGON, C. AREIA, E. BURN, Y. CHOI, I. DRAKOS, M. ABRAHAO, S. FERNANDEZ-BERTOLIN, G. HRIPCSAK, B. KAAS-HANSEN, P. KANDUKURI, J. KORS, K. KOSTKA, S. LIAW, K. LYNCH, G. MACHNICKI, M. MATHENY, D. MORALES, F. NYBERG, R. PARK, A. PRATS-URIBE, N. PRATT, G. RAO, C. REICH, M. RIVERA, T. SEINEN, A. SHOAIBI, M. SPOTNITZ, E. STEYERBERG, M. SUCHARD, S. YOU, L. ZHANG, L. ZHOU, P. RYAN, D. PRIETO-ALHAMBRA, J. REPS and P. RIJNBEEK
2022 Jan 30; . doi:10.1186/s12874-022-01505-z; PMID:35094685

  • Ans: 30/01/2022
  • FI: 4

Background We investigated whether we could use influenza data to develop prediction models for COVID-19 to increase the speed at which prediction models can reliably be developed and validated early in a pandemic. We developed COVID-19 Estimated Risk (COVER) scores that quantify a patient’s risk of hospital admission with pneumonia (COVER-H), hospitalization with pneumonia requiring intensive services or death (COVER-I), or fatality (COVER-F) in the 30-days following COVID-19 diagnosis using historical data from patients with influenza or flu-like symptoms and tested this in COVID-19 patients. Methods We analyzed a federated network of electronic medical records and administrative claims data from 14 data sources and 6 countries containing data collected on or before 4/27/2020. We used a 2-step process to develop 3 scores using historical data from patients with influenza or flu-like symptoms any time prior to 2020. The first step was to create a data-driven model using LASSO regularized logistic regression, the covariates of which were used to develop aggregate covariates for the second step where the COVER scores were developed using a smaller set of features. These 3 COVER scores were then externally validated on patients with 1) influenza or flu-like symptoms and 2) confirmed or suspected COVID-19 diagnosis across 5 databases from South Korea, Spain, and the United States. Outcomes included i) hospitalization with pneumonia, ii) hospitalization with pneumonia requiring intensive services or death, and iii) death in the 30 days after index date. Results Overall, 44,507 COVID-19 patients were included for model validation. We identified 7 predictors (history of cancer, chronic obstructive pulmonary disease, diabetes, heart disease, hypertension, hyperlipidemia, kidney disease) which combined with age and sex discriminated which patients would experience any of our three outcomes. The models achieved good performance in influenza and COVID-19 cohorts. For COVID-19 the AUC ranges were, COVER-H: 0.69-0.81, COVER-I: 0.73-0.91, and COVER-F: 0.72-0.90. Calibration varied across the validations with some of the COVID-19 validations being less well calibrated than the influenza validations. Conclusions This research demonstrated the utility of using a proxy disease to develop a prediction model. The 3 COVER models with 9-predictors that were developed using influenza data perform well for COVID-19 patients for predicting hospitalization, intensive services, and fatality. The scores showed good discriminatory performance which transferred well to the COVID-19 population. There was some miscalibration in the COVID-19 validations, which is potentially due to the difference in symptom severity between the two diseases. A possible solution for this is to recalibrate the models in each location before use.

Characteristics and outcomes of COVID-19 patients with and without asthma from the United States, South Korea, and Europe

D. MORALES, A. OSTROPOLETS, L. LAI, A. SENA, S. DUVALL, M. SUCHARD, K. VERHAMME, P. RJINBEEK, J. POSADA, W. AHMED, T. ALSHAMMARY, H. ALGHOUL, O. ALSER, C. AREIA, C. BLACKETER, E. BURN, P. CASAJUST, S. YOU, D. DAWOUD, A. GOLOZAR, M. GONG, J. JONNAGADDALA, K. LYNCH, M. MATHENY, E. MINTY, F. NYBERG, A. URIBE, M. RECALDE, C. REICH, M. SCHEUMIE, K. SHAH, N. SHAH, L. SCHILLING, D. VIZCAYA, L. ZHANG, G. HRIPCSAK, P. RYAN, D. PRIETO-ALHAMBRA, T. DURATE-SALLES and K. KOSTKA
2022 Jan 5; . doi:10.1080/02770903.2021.2025392; PMID:35012410

  • Ans: 05/01/2022
  • FI: 1.9

Objective: Large international comparisons describing the clinical characteristics of patients with COVID-19 are limited. The aim of the study was to perform a large-scale descriptive characterization of COVID-19 patients with asthma. Methods: We included nine databases contributing data from January to June 2020 from the US, South Korea (KR), Spain, UK and the Netherlands. We defined two cohorts of COVID-19 patients (‘diagnosed’ and ‘hospitalized’) based on COVID-19 disease codes. We followed patients from COVID-19 index date to 30 days or death. We performed descriptive analysis and reported the frequency of characteristics and outcomes in people with asthma defined by codes and prescriptions. Results: The diagnosed and hospitalized cohorts contained 666,933 and 159,552 COVID-19 patients respectively. Exacerbation in people with asthma was recorded in 1.6-8.6% of patients at presentation. Asthma prevalence ranged from 6.2% (95% CI 5.7-6.8) to 18.5% (95% CI 18.2-18.8) in the diagnosed cohort and 5.2% (95% CI 4.0-6.8) to 20.5% (95% CI 18.6-22.6) in the hospitalized cohort. Asthma patients with COVID-19 had high prevalence of comorbidity including hypertension, heart disease, diabetes and obesity. Mortality ranged from 2.1% (95% CI 1.8-2.4) to 16.9% (95% CI 13.8-20.5) and similar or lower compared to COVID-19 patients without asthma. Acute respiratory distress syndrome occurred in 15-30% of hospitalized COVID-19 asthma patients. Conclusion: The prevalence of asthma among COVID-19 patients varies internationally. Asthma patients with COVID-19 have high comorbidity. The prevalence of asthma exacerbation at presentation was low. Whilst mortality was similar among COVID-19 patients with and without asthma, this could be confounded by differences in clinical characteristics. Further research could help identify high-risk asthma patients. KEY MESSAGES Asthma prevalence in COVID-19 patients varied internationally (5.2-20.5%).The prevalence of asthma exacerbation at presentation with COVID-19 in diagnosed and hospitalized patients was low.Comorbidities were common in COVID-19 patients with asthma. Supplemental data for this article is available online at https://doi.org/10.1080/02770903.2021.2025392 .

Unraveling COVID-19: A Large-Scale Characterization of 4.5 Million COVID-19 Cases Using CHARYBDIS

K. KOSTKA, T. DUARTE-SALLES, A. PRATS-URIBE, A. SENA, A. PISTILLO, S. KHALID, L. LAI, A. GOLOZAR, T. ALSHAMMARI, D. DAWOUD, F. NYBERG, A. WILCOX, A. ANDRYC, A. WILLIAMS, A. OSTROPOLETS, C. AREIA, C. JUNG, C. HARLE, C. REICH, C. BLACKETER, D. MORALES, D. DORR, E. BURN, E. ROEL, E. TAN, E. MINTY, F. DEFALCO, G. DE MAEZTU, G. LIPORI, H. ALGHOUL, H. ZHU, J. THOMAS, J. BIAN, J. PARK, J. ROLDAN, J. POSADA, J. BANDA, J. HORCAJADA, J. KOHLER, K. SHAH, K. NATARAJAN, K. LYNCH, L. LIU, L. SCHILLING, M. RECALDE, M. SPOTNITZ, M. GONG, M. MATHENY, N. VALVENY, N. WEISKOPF, N. SHAH, O. ALSER, P. CASAJUST, R. PARK, R. SCHUFF, S. SEAGER, S. DUVALL, S. YOU, S. SONG, S. FERNANDEZ-BERTOLIN, S. FORTIN, T. MAGOC, T. FALCONER, V. SUBBIAN, V. HUSER, W. AHMED, W. CARTER, Y. GUAN, Y. GALVAN, X. HE, P. RIJNBEEK, G. HRIPCSAK, P. RYAN, M. SUCHARD and D. PRIETO-ALHAMBRA
2022 Jan 1; . doi:10.2147/CLEP.S323292; PMID:35345821

  • Ans: 01/01/2022
  • FI: 3.9

Purpose: Routinely collected real world data (RWD) have great utility in aiding the novel coronavirus disease (COVID-19) pandemic response. Here we present the international Observational Health Data Sciences and Informatics (OHDSI) Characterizing Health Associated Risks and Your Baseline Disease In SARS-COV-2 (CHARYBDIS) framework for standardisation and analysis of COVID19 RWD. Patients and Methods: We conducted a descriptive retrospective database study using a federated network of data partners in the United States, Europe (the Netherlands, Spain, the UK, Germany, France and Italy) and Asia (South Korea and China). The study protocol and analytical package were released on 11th June 2020 and are iteratively updated via GitHub. We identified three non mutually exclusive cohorts of 4,537,153 individuals with a clinical COVID-19 diagnosis or positive test, 886,193 hospitalized with COVID-19, and 113,627 hospitalized with COVID-19 requiring intensive services. Results: We aggregated over 22,000 unique characteristics describing patients with COVID-19. All comorbidities, symptoms, medications, and outcomes are described by cohort in aggregate counts and are readily available online. Globally, we observed similarities in the USA and Europe: more women diagnosed than men but more men hospitalized than women, most diagnosed cases between 25 and 60 years of age versus most hospitalized cases between 60 and 80 years of age. South Korea differed with more women than men hospitalized. Common comorbidities included type 2 diabetes, hypertension, chronic kidney disease and heart disease. Common presenting symptoms were dyspnea, cough and fever. Symptom data availability was more common in hospitalized cohorts than diagnosed. Conclusion: We constructed a global, multi-centre view to describe trends in COVID-19 progression, management and evolution over time. By characterising baseline variability in patients and geography, our work provides critical context that may otherwise be misconstrued as data quality issues. This is important as we perform studies on adverse events of special interest in COVID-19 vaccine surveillance.

Characteristics and outcomes of COVID-19 patients with COPD from the United States, South Korea, and Europe

D. PRIETO and T. DUARTE
2022 Jan 1;

  • Ans: 01/01/2022
  • FI:
Time trends in the incidence of cardiovascular disease, hypertension, and diabetes by socioeconomic status in Catalonia, Spain

C. REYES, T. DUARTE, M. RECALDE, A. PISTILLO and M. BENNETT
2022 Jan 1;

  • Ans: 01/01/2022
  • FI:

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